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Image Search Results
Journal: ACS Chemical Biology
Article Title: Machine Learning Uncovers Natural Product Modulators of the 5-Lipoxygenase Pathway and Facilitates the Elucidation of Their Biological Mechanisms
doi: 10.1021/acschembio.3c00725
Figure Lengend Snippet: Workflow of predicting natural product 5-LO inhibitors. Known small-molecule—5-LO interactions were cleaned up; the molecules were stratified into strong and weak/nonmodulators (cutoff IC 50 = 1 μM). Numerical structure descriptors were generated for each molecule. Three predictive classification models were built (gradient boosted trees, logistic regression, and naive Bayesian) based on the descriptors. The models were then used to predict the activities of 24,500 commercially available natural products and natural product derivatives. A subset of triple- and double-positive predictions were further investigated in the PubChem database. Eleven natural products with bioactivities that could be consistent with 5-LO inhibition were chosen for further testing. A similar approach was taken to predict 5-LO pathway inhibitors from the data set of FLAP activity modulators, as described in the text.
Article Snippet: Data set of 5-LO modulators used to build ML models, data set of commercially available natural products, data set of FLAP modulators used to build ML models, metrics of ML models used in this study, list of molecular fragments in 5-LO modulators and their frequencies in strong and weak modulator subsets, 5-LO modulator-derived ML model predictions on the natural product data set, similarity search of tested natural products in the 5-LO modulator data set, FLAP modulator-derived ML model predictions on the natural product data set,
Techniques: Generated, Inhibition, Activity Assay